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PPFIA2-AS1 PPFIA2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102724663, updated on 10-Oct-2023

Summary

Official Symbol
PPFIA2-AS1provided by HGNC
Official Full Name
PPFIA2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53397
See related
Ensembl:ENSG00000257467 AllianceGenome:HGNC:53397
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 4.9) See more
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Genomic context

Location:
12q21.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (81279189..81312422)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (81258168..81291398)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (81672968..81706201)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984535 Neighboring gene NANOG hESC enhancer GRCh37_chr12:81489283-81489784 Neighboring gene acyl-CoA synthetase short chain family member 3 Neighboring gene NANOG hESC enhancer GRCh37_chr12:81602215-81602716 Neighboring gene microRNA 4699 Neighboring gene PTPRF interacting protein alpha 2 Neighboring gene uncharacterized LOC105369872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:82005227-82005726 Neighboring gene NANOG hESC enhancer GRCh37_chr12:82087706-82088318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:82151989-82152927 Neighboring gene vomeronasal 1 receptor 57 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120491.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078920
    Related
    ENST00000552534.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    81279189..81312422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    81258168..81291398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)