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LMX1A-AS1 LMX1A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102725140, updated on 10-Oct-2023

Summary

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Official Symbol
LMX1A-AS1provided by HGNC
Official Full Name
LMX1A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40344
See related
AllianceGenome:HGNC:40344
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.1) See more
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Genomic context

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See LMX1A-AS1 in Genome Data Viewer
Location:
1q23.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (165215955..165219044)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (164562316..164565405)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985452 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1498 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:165131828-165132328 Neighboring gene LMX1A antisense RNA 2 Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene NANOG hESC enhancer GRCh37_chr1:165223074-165223646 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_852 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1499 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2015 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:165370087-165370588 Neighboring gene retinoid X receptor gamma Neighboring gene ReSE screen-validated silencer GRCh37_chr1:165446262-165446483 Neighboring gene LRRC52 antisense RNA 1 Neighboring gene PRELID1 pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183535.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL390730

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    165215955..165219044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    164562316..164565405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases