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Rdh9 retinol dehydrogenase 9 [ Mus musculus (house mouse) ]

Gene ID: 103142, updated on 23-Jun-2021

Summary

Official Symbol
Rdh9provided by MGI
Official Full Name
retinol dehydrogenase 9provided by MGI
Primary source
MGI:MGI:2143528
See related
Ensembl:ENSMUSG00000056148
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cra; Crad3; AI121090
Expression
Biased expression in liver adult (RPKM 20.2), large intestine adult (RPKM 14.5) and 4 other tissues See more
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Genomic context

See Rdh9 in Genome Data Viewer
Location:
10; 10 D3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127612274..127628566)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127776405..127792697)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127213461..127229753)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 182 Neighboring gene retinol dehydrogenase 1 (all trans) Neighboring gene retinol dehydrogenase 16 Neighboring gene retinol dehydrogenase 18, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

General protein information

Preferred Names
retinol dehydrogenase 9
Names
cis-retinol/androgen dehydrogenase type 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153133.2NP_694773.1  retinol dehydrogenase 9 precursor

    See identical proteins and their annotated locations for NP_694773.1

    Status: VALIDATED

    Source sequence(s)
    AC129576, AC131690
    Consensus CDS
    CCDS24251.1
    UniProtKB/TrEMBL
    Q8K5C8
    Related
    ENSMUSP00000057732.7, ENSMUST00000052652.7
    Conserved Domains (2) summary
    cd09805
    Location:30306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    pfam00106
    Location:30218
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    127612274..127628566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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