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pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103178784, updated on 11-Mar-2024

Summary

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Gene symbol
pdxdc1
Gene description
pyridoxal-dependent decarboxylase domain containing 1
See related
Ensembl:ENSCMIG00000009244
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704757.1 (11826886..11851831, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890083.1 (4221144..4237409, complement)

NW_024704757.1Genomic Context describing neighboring genes Neighboring gene RRN3 homolog, RNA polymerase I transcription factor Neighboring gene N-terminal asparagine amidase Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene MPV17 mitochondrial membrane protein like Neighboring gene bMERB domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbon-carbon lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyridoxal-dependent decarboxylase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704757.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    11826886..11851831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042341033.1 → XP_042196967.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A4W3HXI5
    Conserved Domains (1) summary
    cl18945
    Location:206 → 400
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  2. XM_042341031.1 → XP_042196965.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    V9KCS9
    Conserved Domains (1) summary
    cl18945
    Location:206 → 389
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  3. XM_042341032.1 → XP_042196966.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4W3HXI5
    Conserved Domains (1) summary
    cl18945
    Location:207 → 401
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  4. XM_042341030.1 → XP_042196964.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    V9KCS9
    Conserved Domains (1) summary
    cl18945
    Location:207 → 390
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
Heading Accession and Version

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