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rad51ap1 RAD51 associated protein 1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103185573, updated on 11-Mar-2024

Summary

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Gene symbol
rad51ap1
Gene description
RAD51 associated protein 1
See related
Ensembl:ENSCMIG00000012697
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704746.1 (29458342..29480502, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890172.1 (2090127..2111243, complement)

NW_024704746.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A9a Neighboring gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 Neighboring gene chromosome unknown C12orf4 homolog Neighboring gene fibroblast growth factor 4A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RAD51-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704746.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    29458342..29480502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007904168.2 → XP_007902359.1  RAD51-associated protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4W3IGH4, A0A4W3IPD3
    Related
    ENSCMIP00000029344.1
    Conserved Domains (1) summary
    pfam15696
    Location:250 → 283
    RAD51_interact; RAD51 interacting motif

  2. XM_007904167.2 → XP_007902358.1  RAD51-associated protein 1 isoform X1

    See identical proteins and their annotated locations for XP_007902358.1

    UniProtKB/TrEMBL
    A0A4W3IPD3, V9KWC5
    Related
    ENSCMIP00000029340.1
    Conserved Domains (1) summary
    pfam15696
    Location:279 → 312
    RAD51_interact; RAD51 interacting motif

  3. XM_042335547.1 → XP_042191481.1  RAD51-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4W3IPD3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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