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canx calnexin [ Callorhinchus milii (elephant shark) ]

Gene ID: 103188229, updated on 11-Mar-2024

Summary

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Gene symbol
canx
Gene description
calnexin
See related
Ensembl:ENSCMIG00000006849
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704754.1 (19177320..19197458, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890257.1 (435350..455872)

NW_024704754.1Genomic Context describing neighboring genes Neighboring gene leukotriene C4 synthase Neighboring gene mastermind-like transcriptional coactivator 1 Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B Neighboring gene transfer RNA valine (anticodon GAC) Neighboring gene sequestosome 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calnexin
Names
calnexin-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704754.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    19177320..19197458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007908134.2 → XP_007906325.1  calnexin

    See identical proteins and their annotated locations for XP_007906325.1

    UniProtKB/TrEMBL
    V9KD29, V9KIB3
    Related
    ENSCMIP00000013769.1
    Conserved Domains (1) summary
    pfam00262
    Location:66 → 435
    Calreticulin; Calreticulin family

  2. XM_007908137.2 → XP_007906328.1  calnexin

    See identical proteins and their annotated locations for XP_007906328.1

    UniProtKB/TrEMBL
    V9KD29, V9KIB3
    Conserved Domains (1) summary
    pfam00262
    Location:66 → 435
    Calreticulin; Calreticulin family

  3. XM_007908136.2 → XP_007906327.1  calnexin

    See identical proteins and their annotated locations for XP_007906327.1

    UniProtKB/TrEMBL
    V9KD29, V9KIB3
    Conserved Domains (1) summary
    pfam00262
    Location:66 → 435
    Calreticulin; Calreticulin family
Nucleotide Protein
Heading Accession and Version

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