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PDPN podoplanin [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 103352509, updated on 11-Mar-2024

Summary

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Gene symbol
PDPN
Gene description
podoplanin
See related
Ensembl:ENSOCUG00000005899
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259186.1 (1231205..1262716, complement)

NW_026259186.1Genomic Context describing neighboring genes Neighboring gene PR/SET domain 2 Neighboring gene uncharacterized LOC127487749 Neighboring gene uncharacterized LOC127487747 Neighboring gene leucine rich repeat containing 38 Neighboring gene PRAME family member 20-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026259186 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Critical Epitope of Anti-Rabbit Podoplanin Monoclonal Antibodies for Immunohistochemical Analysis. Honma R, et al. Monoclon Antib Immunodiagn Immunother, 2016 Apr. PMID 26977704

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rho protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in actin-mediated cell contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lung development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of epithelial to mesenchymal transition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of extracellular matrix disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of platelet aggregation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of lamellipodium morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of myofibroblast contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hyperoxia IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in filopodium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
podoplanin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NW_026259186.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    1231205..1262716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008275367.3 → XP_008273589.2  podoplanin isoform X1

  2. XM_008275368.3 → XP_008273590.2  podoplanin isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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