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ikzf1 IKAROS family zinc finger 1 (Ikaros) [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103387497, updated on 11-Mar-2024

Summary

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Gene symbol
ikzf1
Gene description
IKAROS family zinc finger 1 (Ikaros)
See related
Ensembl:ENSCSEG00000008620
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Also known as
ikaros
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 12 NC_024318.1 (11464559..11485433, complement)

Chromosome 12 - NC_024318.1Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase Neighboring gene fidgetin-like 1 Neighboring gene molybdenum cofactor sulfurase Neighboring gene von Willebrand factor C domain containing 2 Neighboring gene uncharacterized LOC103387499

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024318.1 Chromosome 12 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ikaros expression in tongue sole macrophages: a marker for lipopolysaccharide- and lipoteichoic acid-induced inflammatory responses. Li F, et al. Mol Biol Rep, 2011 Apr. PMID 21069465

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein Ikaros

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024318.1 Reference Cse_v1.0 Primary Assembly

    Range
    11464559..11485433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008322170.3 → XP_008320392.2  DNA-binding protein Ikaros isoform X3

    UniProtKB/TrEMBL
    A0A3P8VDP0
    Related
    ENSCSEP00000013418.1, ENSCSET00000013577.1

  2. XM_017037554.2 → XP_016893043.1  DNA-binding protein Ikaros isoform X1

    UniProtKB/TrEMBL
    A0A3P8VDP0, A0A3P8VLT7
    Related
    ENSCSEP00000013410.1, ENSCSET00000013570.1

  3. XM_017037555.2 → XP_016893044.1  DNA-binding protein Ikaros isoform X2

    UniProtKB/TrEMBL
    A0A3P8VDP0, A0A3P8VJG2
    Related
    ENSCSEP00000013406.1, ENSCSET00000013565.1

  4. XM_025060708.1 → XP_024916476.1  DNA-binding protein Ikaros isoform X5

    UniProtKB/TrEMBL
    D2IYF8
    Conserved Domains (3) summary
    COG5048
    Location:1 → 99
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:28 → 48
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:40 → 65
    zf-H2C2_2; Zinc-finger double domain

  5. XM_025060707.1 → XP_024916475.1  DNA-binding protein Ikaros isoform X4

    Conserved Domains (2) summary
    sd00017
    Location:92 → 112
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:105 → 129
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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