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LOC103421948 transcription factor MYB113-like [ Malus domestica (apple) ]

Gene ID: 103421948, updated on 18-Aug-2023

Summary

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Gene symbol
LOC103421948
Gene description
transcription factor MYB113-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
Also known as
MYB1; MYB10; MYB10a; MYB10b; MYB10d; MdMYBA
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Genomic context

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See LOC103421948 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 9 NC_041797.1 (35613210..35619657)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 9 Unlocalized Scaffold (alt_haplotype2.MalDomGD1.0) NW_007545690.1 (1960820..1961469)

Chromosome 9 - NC_041797.1Genomic Context describing neighboring genes Neighboring gene UTP--glucose-1-phosphate uridylyltransferase Neighboring gene transcription factor MYB90-like Neighboring gene uncharacterized LOC114827067 Neighboring gene protein C2-DOMAIN ABA-RELATED 4-like Neighboring gene protein C2-DOMAIN ABA-RELATED 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation and functional analysis of a MYB transcription factor gene that is a key regulator for the development of red coloration in apple skin. Ban Y, et al. Plant Cell Physiol, 2007 Jul. PMID 17526919
  2. Expression and functional analysis of a novel MYB gene, MdMYB110a_JP, responsible for red flesh, not skin color in apple fruit. Umemura H, et al. Planta, 2013 Jul. PMID 23568403
  3. Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10. Espley RV, et al. Plant J, 2007 Feb. PMID 17181777, Free PMC Article
  4. MdWRKY11 Participates in Anthocyanin Accumulation in Red-Fleshed Apples by Affecting MYB Transcription Factors and the Photoresponse Factor MdHY5. Liu W, et al. J Agric Food Chem, 2019 Aug 14. PMID 31310107

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. MdWRKY11 bound to W-box cis-elements in the promoters of MdMYB10, MdMYB11, and MdUFGT.
    Title: MdWRKY11 Participates in Anthocyanin Accumulation in Red-Fleshed Apples by Affecting MYB Transcription Factors and the Photoresponse Factor MdHY5.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
transcription factor MYB113-like
Names
MYB transcription factor 10
MYB1 transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328848.1 → NP_001315777.1  transcription factor MYB113-like

    Status: PROVISIONAL

    Source sequence(s)
    AB744002
    UniProtKB/TrEMBL
    A0SQ37, E2RZU2, Q0QMR0
    Conserved Domains (2) summary
    smart00717
    Location:12 → 61
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:12 → 59
    Myb_DNA-binding; Myb-like DNA-binding domain

RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041797.1 Reference ASM211411v1 Primary Assembly

    Range
    35613210..35619657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029107484.1 → XP_028963317.1  transcription factor MYB113-like isoform X1

    UniProtKB/TrEMBL
    A0SQ35, A0SQ37
    Conserved Domains (1) summary
    PLN03212
    Location:8 → 177
    PLN03212; Transcription repressor MYB5; Provisional

  2. XM_029107483.1 → XP_028963316.1  transcription factor MYB113-like isoform X1

    UniProtKB/TrEMBL
    A0SQ35, A0SQ37
    Conserved Domains (1) summary
    PLN03212
    Location:8 → 177
    PLN03212; Transcription repressor MYB5; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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