Format

Send to:

Choose Destination

Gm38667 predicted gene, 38667 [ Mus musculus (house mouse) ]

Gene ID: 103611159, updated on 25-Jan-2022

Summary

Official Symbol
Gm38667provided by MGI
Official Full Name
predicted gene, 38667provided by MGI
Primary source
MGI:MGI:5621552
See related
AllianceGenome:MGI:5621552
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pcdha7-g
Expression
Broad expression in frontal lobe adult (RPKM 48.9), whole brain E14.5 (RPKM 44.3) and 24 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Gm38667 in Genome Data Viewer
Location:
18 B2- B3; 18
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (37106855..37974926)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (36973802..37841873)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene vault RNA component 5 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene protocadherin alpha 1 Neighboring gene predicted gene, 37013 Neighboring gene protocadherin alpha 2 Neighboring gene protocadherin alpha 3 Neighboring gene protocadherin alpha 4 Neighboring gene predicted gene, 38666 Neighboring gene protocadherin alpha 5 Neighboring gene predicted gene, 36858 Neighboring gene protocadherin alpha 6 Neighboring gene protocadherin alpha 7 Neighboring gene protocadherin alpha 10 Neighboring gene protocadherin alpha 8 Neighboring gene protocadherin alpha 11 Neighboring gene protocadherin alpha 9 Neighboring gene protocadherin alpha 5 pseudogene Neighboring gene protocadherin alpha 12 Neighboring gene heat shock transcription factor 2 binding protein pseudogene Neighboring gene protocadherin alpha subfamily C, 1 Neighboring gene protocadherin alpha subfamily C, 2 Neighboring gene protocadherin beta 1 Neighboring gene RAD18 homolog pseudogene Neighboring gene protocadherin beta 2 Neighboring gene protocadherin beta 3 Neighboring gene protocadherin beta 4 Neighboring gene protocadherin beta 5 Neighboring gene protocadherin beta 6 Neighboring gene protocadherin beta 7 Neighboring gene protocadherin beta 8 Neighboring gene protocadherin beta 10 Neighboring gene protocadherin beta 9 Neighboring gene protocadherin beta 11 Neighboring gene predicted gene, 20162 Neighboring gene protocadherin beta 12 Neighboring gene protocadherin beta 13 Neighboring gene protocadherin beta 14 Neighboring gene protocadherin beta 15 Neighboring gene protocadherin beta 16 Neighboring gene protocadherin beta 17 Neighboring gene protocadherin beta 18 Neighboring gene protocadherin beta 19 Neighboring gene protocadherin beta 20 Neighboring gene protocadherin beta 21 Neighboring gene protocadherin beta 22 Neighboring gene solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2 Neighboring gene protocadherin gamma subfamily A, 1 Neighboring gene protein UXT pseudogene Neighboring gene protocadherin gamma subfamily A, 2 Neighboring gene protocadherin gamma subfamily A, 3 Neighboring gene protocadherin gamma subfamily B, 1 Neighboring gene protocadherin gamma subfamily A, 4 Neighboring gene TATA-box binding protein associated factor 7 Neighboring gene protocadherin gamma subfamily B, 2 Neighboring gene protocadherin gamma subfamily A, 5 Neighboring gene predicted gene, 24401 Neighboring gene protocadherin gamma subfamily A, 6 Neighboring gene protocadherin gamma subfamily A, 7 Neighboring gene protocadherin gamma subfamily B, 4 Neighboring gene protocadherin gamma subfamily A, 8 Neighboring gene protocadherin gamma subfamily B, 5 Neighboring gene protocadherin gamma subfamily A, 10 Neighboring gene protocadherin gamma subfamily A, 9 Neighboring gene protocadherin gamma subfamily A, 11 Neighboring gene protocadherin gamma subfamily B, 6 Neighboring gene protocadherin gamma subfamily A, 12 Neighboring gene protocadherin gamma subfamily B, 7 Neighboring gene protocadherin gamma subfamily B, 8 Neighboring gene protocadherin gamma subfamily C, 3 Neighboring gene protocadherin gamma subfamily C, 4 Neighboring gene protocadherin gamma subfamily C, 5 Neighboring gene predicted gene, 29994 Neighboring gene microRNA 6979 Neighboring gene diaphanous related formin 1 Neighboring gene histone deacetylase 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General protein information

Preferred Names
protocadherin alpha 7-gamma

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001301259.1NP_001288188.1  protocadherin alpha 7-gamma

    Status: VALIDATED

    Source sequence(s)
    AC020968, AC129315, AF464177
    UniProtKB/TrEMBL
    Q8K490
    Conserved Domains (3) summary
    cd11304
    Location:256355
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:39120
    Cadherin_2; Cadherin-like
    pfam15974
    Location:795891
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    37106855..37974926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center