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Samd9l sterile alpha motif domain containing 9 like [ Rattus norvegicus (Norway rat) ]

Gene ID: 103690031, updated on 13-Apr-2024

Summary

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Official Symbol
Samd9lprovided by RGD
Official Full Name
sterile alpha motif domain containing 9 likeprovided by RGD
Primary source
RGD:1562531
See related
Ensembl:ENSRNOG00000063679 AllianceGenome:RGD:1562531
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Samd9l1
Expression
Biased expression in Spleen (RPKM 577.3), Thymus (RPKM 401.1) and 9 other tissues See more
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Genomic context

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See Samd9l in Genome Data Viewer
Location:
4q13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (32316748..32331112, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (31362054..31376412, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (28343136..28351062, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain-containing protein 9-like Neighboring gene sterile alpha motif domain containing 9 like 2 Neighboring gene HEPACAM family member 2 Neighboring gene VPS50 subunit of EARP/GARPII complex

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
acts_upstream_of_or_within common myeloid progenitor cell proliferation ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within endosomal vesicle fusion ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within hematopoietic progenitor cell differentiation ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within regulation of protein catabolic process ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within spleen development ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within stem cell division ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in early endosome ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
sterile alpha motif domain containing 9 like 1
Names
sterile alpha motif domain-containing protein 9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419900.1 → NP_001406829.1  sterile alpha motif domain containing 9 like 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A0G2JVT8

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    32316748..32331112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108588.2 → XP_038964516.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8
    Related
    ENSRNOP00000090660.1
    Conserved Domains (1) summary
    cd09528
    Location:12 → 76
    SAM_Samd9_Samd9L; SAM domain of Samd9/Samd9L subfamily

  2. XM_039108595.2 → XP_038964523.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8
    Conserved Domains (1) summary
    cd09528
    Location:12 → 76
    SAM_Samd9_Samd9L; SAM domain of Samd9/Samd9L subfamily

  3. XM_039108591.2 → XP_038964519.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8
    Conserved Domains (1) summary
    cd09528
    Location:12 → 76
    SAM_Samd9_Samd9L; SAM domain of Samd9/Samd9L subfamily

  4. XM_039108594.2 → XP_038964522.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8
    Conserved Domains (1) summary
    cd09528
    Location:12 → 76
    SAM_Samd9_Samd9L; SAM domain of Samd9/Samd9L subfamily

  5. XM_039108586.2 → XP_038964514.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8
    Conserved Domains (1) summary
    cd09528
    Location:12 → 76
    SAM_Samd9_Samd9L; SAM domain of Samd9/Samd9L subfamily

  6. XM_063285347.1 → XP_063141417.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8

  7. XM_063285346.1 → XP_063141416.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8

  8. XM_039108587.2 → XP_038964515.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8
    Related
    ENSRNOP00000094434.1
    Conserved Domains (1) summary
    cd09528
    Location:12 → 76
    SAM_Samd9_Samd9L; SAM domain of Samd9/Samd9L subfamily

  9. XM_039108593.2 → XP_038964521.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8
    Conserved Domains (1) summary
    cd09528
    Location:12 → 76
    SAM_Samd9_Samd9L; SAM domain of Samd9/Samd9L subfamily

  10. XM_063285345.1 → XP_063141415.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8

  11. XM_063285348.1 → XP_063141418.1  sterile alpha motif domain containing 9 like 1 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVT8
Nucleotide Protein Strain
Heading Accession and Version

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