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Dcaf6 DDB1 and CUL4 associated factor 6 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103727115, updated on 11-Mar-2024

Summary

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Gene symbol
Dcaf6
Gene description
DDB1 and CUL4 associated factor 6
See related
Ensembl:ENSNGAG00000000565
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008360313.1 (2515299..2602123, complement)

NW_008360313.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-alpha 1-like Neighboring gene TOR signaling pathway regulator Neighboring gene G protein-coupled receptor 161

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008360313 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DDB1- and CUL4-associated factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008360313.1 Reference S.galili_v1.0 Primary Assembly

    Range
    2515299..2602123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017796064.1 → XP_017651553.1  DDB1- and CUL4-associated factor 6 isoform X12

    UniProtKB/TrEMBL
    A0A8C6QAX4
    Related
    ENSNGAP00000000739.1, ENSNGAT00000000752.1
    Conserved Domains (3) summary
    PRK08581
    Location:375 → 641
    PRK08581; amidase domain-containing protein
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_017796062.1 → XP_017651551.1  DDB1- and CUL4-associated factor 6 isoform X10

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_017796063.1 → XP_017651552.1  DDB1- and CUL4-associated factor 6 isoform X11

    UniProtKB/TrEMBL
    A0A8C6QAX4
    Conserved Domains (3) summary
    PRK08581
    Location:405 → 661
    PRK08581; amidase domain-containing protein
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_017796061.1 → XP_017651550.1  DDB1- and CUL4-associated factor 6 isoform X9

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  5. XM_017796059.1 → XP_017651548.1  DDB1- and CUL4-associated factor 6 isoform X6

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  6. XM_017796058.1 → XP_017651547.1  DDB1- and CUL4-associated factor 6 isoform X5

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  7. XM_029559501.1 → XP_029415361.1  DDB1- and CUL4-associated factor 6 isoform X8

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  8. XM_017796060.1 → XP_017651549.1  DDB1- and CUL4-associated factor 6 isoform X7

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  9. XM_029559500.1 → XP_029415360.1  DDB1- and CUL4-associated factor 6 isoform X4

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  10. XM_029559498.1 → XP_029415358.1  DDB1- and CUL4-associated factor 6 isoform X2

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  11. XM_029559499.1 → XP_029415359.1  DDB1- and CUL4-associated factor 6 isoform X3

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  12. XM_008824918.2 → XP_008823140.1  DDB1- and CUL4-associated factor 6 isoform X1

    Conserved Domains (2) summary
    sd00039
    Location:55 → 92
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:43 → 292
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_003848057.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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