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F13a1 coagulation factor XIII A chain [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103732915, updated on 11-Mar-2024

Summary

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Gene symbol
F13a1
Gene description
coagulation factor XIII A chain
See related
Ensembl:ENSNGAG00000022897
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008336933.1 (8196206..8413225)

NW_008336933.1Genomic Context describing neighboring genes Neighboring gene prothymosin alpha-like Neighboring gene lymphocyte antigen 86 Neighboring gene rho GTPase-activating protein 20 pseudogene Neighboring gene neuritin 1 Neighboring gene 60S ribosomal protein L29 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008336933 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-glutamine gamma-glutamyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in blood coagulation, fibrin clot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide cross-linking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coagulation factor XIII A chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008336933.1 Reference S.galili_v1.0 Primary Assembly

    Range
    8196206..8413225
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008831654.2 → XP_008829876.1  coagulation factor XIII A chain isoform X1

    UniProtKB/TrEMBL
    A0A8C6RYH7
    Related
    ENSNGAP00000024721.1, ENSNGAT00000030433.1
    Conserved Domains (3) summary
    smart00460
    Location:309 → 400
    TGc; Transglutaminase/protease-like homologues
    pfam00868
    Location:46 → 164
    Transglut_N; Transglutaminase family
    pfam00927
    Location:519 → 623
    Transglut_C; Transglutaminase family, C-terminal ig like domain

  2. XM_017797775.1 → XP_017653264.1  coagulation factor XIII A chain isoform X2

    Conserved Domains (3) summary
    smart00460
    Location:225 → 316
    TGc; Transglutaminase/protease-like homologues
    pfam00868
    Location:46 → 106
    Transglut_N; Transglutaminase family
    pfam00927
    Location:435 → 539
    Transglut_C; Transglutaminase family, C-terminal ig like domain
Nucleotide Protein
Heading Accession and Version

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