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Pex12 peroxisomal biogenesis factor 12 [ Mus musculus (house mouse) ]

Gene ID: 103737, updated on 23-Jun-2021

Summary

Official Symbol
Pex12provided by MGI
Official Full Name
peroxisomal biogenesis factor 12provided by MGI
Primary source
MGI:MGI:2144177
See related
Ensembl:ENSMUSG00000018733
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI451906; OTTMUSCASG00059419; OTTMUSPWKG00059404
Expression
Ubiquitous expression in testis adult (RPKM 9.3), adrenal adult (RPKM 5.0) and 28 other tissues See more
Orthologs
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Genomic context

See Pex12 in Genome Data Viewer
Location:
11; 11 C
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (83182757..83189849, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (83295072..83299005, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (83108147..83112479, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23444 Neighboring gene schlafen 14 Neighboring gene expressed sequence AA465934 Neighboring gene expressed sequence AI450353 Neighboring gene small nucleolar RNA, C/D box 7 Neighboring gene adaptor-related protein complex 2, beta 1 subunit Neighboring gene predicted gene, 23951 Neighboring gene RAS-like, family 10, member B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein C-terminus binding ISO
Inferred from Sequence Orthology
more info
 
enables ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables zinc ion binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in peroxisome organization ISO
Inferred from Sequence Orthology
more info
 
involved_in protein import into peroxisome matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein import into peroxisome matrix ISO
Inferred from Sequence Orthology
more info
 
involved_in protein monoubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein targeting to peroxisome IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of peroxisomal membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of peroxisomal membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of peroxisomal importomer complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in peroxisomal membrane ISO
Inferred from Sequence Orthology
more info
 
located_in peroxisome ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
peroxisome assembly protein 12
Names
peroxin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001364762.1NP_001351691.1  peroxisome assembly protein 12

    Status: VALIDATED

    Source sequence(s)
    AK035552, AK041175
    Consensus CDS
    CCDS25160.1
    Related
    ENSMUSP00000103781.2, ENSMUST00000108146.8
    Conserved Domains (2) summary
    cd16451
    Location:304345
    mRING_PEX12; Modified RING finger found in peroxin-12 (PEX12) and similar proteins
    pfam04757
    Location:26267
    Pex2_Pex12; Pex2 / Pex12 amino terminal region
  2. NM_001364763.1NP_001351692.1  peroxisome assembly protein 12

    Status: VALIDATED

    Source sequence(s)
    AL603711
    Consensus CDS
    CCDS25160.1
    Related
    ENSMUSP00000135145.2, ENSMUST00000175741.8
    Conserved Domains (2) summary
    cd16451
    Location:304345
    mRING_PEX12; Modified RING finger found in peroxin-12 (PEX12) and similar proteins
    pfam04757
    Location:26267
    Pex2_Pex12; Pex2 / Pex12 amino terminal region
  3. NM_134025.4NP_598786.1  peroxisome assembly protein 12

    See identical proteins and their annotated locations for NP_598786.1

    Status: VALIDATED

    Source sequence(s)
    AK035552
    Consensus CDS
    CCDS25160.1
    UniProtKB/Swiss-Prot
    Q8VC48
    UniProtKB/TrEMBL
    Q5SWQ8
    Related
    ENSMUSP00000018877.3, ENSMUST00000018877.9
    Conserved Domains (2) summary
    cd16451
    Location:304345
    mRING_PEX12; Modified RING finger found in peroxin-12 (PEX12) and similar proteins
    pfam04757
    Location:26267
    Pex2_Pex12; Pex2 / Pex12 amino terminal region

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    83182757..83189849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245454.2XP_030101314.1  peroxisome assembly protein 12 isoform X1

    Conserved Domains (2) summary
    cd16451
    Location:304345
    mRING_PEX12; Modified RING finger found in peroxin-12 (PEX12) and similar proteins
    pfam04757
    Location:26267
    Pex2_Pex12; Pex2 / Pex12 amino terminal region
  2. XM_030245453.2XP_030101313.1  peroxisome assembly protein 12 isoform X1

    Conserved Domains (2) summary
    cd16451
    Location:304345
    mRING_PEX12; Modified RING finger found in peroxin-12 (PEX12) and similar proteins
    pfam04757
    Location:26267
    Pex2_Pex12; Pex2 / Pex12 amino terminal region
  3. XM_030245452.2XP_030101312.1  peroxisome assembly protein 12 isoform X1

    Conserved Domains (2) summary
    cd16451
    Location:304345
    mRING_PEX12; Modified RING finger found in peroxin-12 (PEX12) and similar proteins
    pfam04757
    Location:26267
    Pex2_Pex12; Pex2 / Pex12 amino terminal region
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