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LOC103910015 polypeptide N-acetylgalactosaminyltransferase 10-like [ Danio rerio (zebrafish) ]

Gene ID: 103910015, updated on 11-Mar-2024

Summary

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Gene symbol
LOC103910015
Gene description
polypeptide N-acetylgalactosaminyltransferase 10-like
See related
Ensembl:ENSDARG00000100453
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_008805563.1 (257..6232)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805563.1 (230..6232)

NW_008805563.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase complex subunit SAP30L-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 10-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NW_008805563.1 Reference GRCz11 Primary Assembly

    Range
    257..6232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009298402.3 → XP_009296677.3  polypeptide N-acetylgalactosaminyltransferase 10-like

    UniProtKB/TrEMBL
    A0A8M3AX37
    Related
    ENSDARP00000132758.1, ENSDART00000161353.2
    Conserved Domains (2) summary
    cd02510
    Location:139 → 434
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:450 → 578
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein Strain
Heading Accession and Version

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