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ppargc1a peroxisome proliferator-activated receptor gamma, coactivator 1 alpha [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104953595, updated on 12-Mar-2024

Summary

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Gene symbol
ppargc1a
Gene description
peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011354720.1 (951437..1149924)

NW_011354720.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation termination factor 1b Neighboring gene grainyhead-like protein 1 homolog Neighboring gene putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 Neighboring gene microtubule associated protein 2 Neighboring gene unc-80 homolog, NALCN channel complex subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011354720.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High mitochondrial densities in the hearts of Antarctic icefishes are maintained by an increase in mitochondrial size rather than mitochondrial biogenesis. Urschel MR, et al. J Exp Biol, 2008 Aug. PMID 18689417

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like
Names
peroxisome proliferator gamma coactivator 1 alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011354720.1 Reference NC01 Primary Assembly

    Range
    951437..1149924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010780546.1 → XP_010778848.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like isoform X1

    UniProtKB/TrEMBL
    A0A6I9NVI1
    Conserved Domains (1) summary
    cl17169
    Location:1079 → 1122
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_010780547.1 → XP_010778849.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like isoform X2

    UniProtKB/TrEMBL
    A0A6I9NMK6
    Conserved Domains (1) summary
    cl17169
    Location:1066 → 1109
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_010780548.1 → XP_010778850.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like isoform X3

    UniProtKB/TrEMBL
    A0A6I9NV79
    Conserved Domains (1) summary
    cl17169
    Location:778 → 821
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_010780549.1 → XP_010778851.1  peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like isoform X4

    UniProtKB/TrEMBL
    A0A6I9NWF2
    Conserved Domains (1) summary
    cl17169
    Location:777 → 816
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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