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trmt12 tRNA methyltransferase 12 homolog [ Esox lucius (northern pike) ]

Gene ID: 105029873, updated on 13-Mar-2024

Summary

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Gene symbol
trmt12
Gene description
tRNA methyltransferase 12 homolog
See related
EnsemblRapid:ENSELUG00000026614
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 4 NC_047572.1 (33588199..33593894, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG04 NC_025971.4 (1352212..1356543)

Chromosome 4 - NC_047572.1Genomic Context describing neighboring genes Neighboring gene sushi-repeat containing protein X-linked 2 Neighboring gene synaptotagmin-like 4 Neighboring gene AUP1 lipid droplet regulating VLDL assembly factor Neighboring gene tubulin beta-4B chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA wybutosine-synthesizing protein 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047572.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    33588199..33593894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034291632.1 → XP_034147523.1  tRNA wybutosine-synthesizing protein 2 homolog

    UniProtKB/TrEMBL
    A0A6Q2YB02, A0A6Q2YF65
    Related
    ENSELUP00000063120.1, ENSELUT00000043961.2
    Conserved Domains (1) summary
    COG2520
    Location:5 → 406
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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