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SPDYE15 speedy/RINGO cell cycle regulator family member E15 [ Homo sapiens (human) ]

Gene ID: 105180391, updated on 23-Nov-2023

Summary

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Official Symbol
SPDYE15provided by HGNC
Official Full Name
speedy/RINGO cell cycle regulator family member E15provided by HGNC
Primary source
HGNC:HGNC:51511
See related
Ensembl:ENSG00000286014 AllianceGenome:HGNC:51511
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPDYE15P
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Genomic context

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See SPDYE15 in Genome Data Viewer
Location:
7q11.23
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (75335343..75347701)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (76538563..76548628)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (74964556..74974618)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene speedy/RINGO cell cycle regulator family member E14 Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 13 Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 10 Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:74987999-74988519 Neighboring gene uncharacterized LOC124901677 Neighboring gene STAG3 cohesin complex component like 1 (pseudogene) Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:75024300-75024907 Neighboring gene FKBP6 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative speedy protein E15
Names
Williams Beuren syndrome chromosome region 19 pseudogene
speedy homolog E1 pseudogene
speedy/RINGO cell cycle regulator family member E1 pseudogene
speedy/RINGO cell cycle regulator family member E15, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001382547.2 → NP_001369476.1  putative speedy protein E15

    Status: VALIDATED

    Source sequence(s)
    AC211486
    Consensus CDS
    CCDS94127.1
    UniProtKB/Swiss-Prot
    A0A494C0Z2, P0DUD3, P0DUD4
    Related
    ENSP00000499200.1, ENST00000612377.3
    Conserved Domains (1) summary
    pfam11357
    Location:107 → 261
    Spy1; Cell cycle regulatory protein

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    75335343..75347701
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047419778.1 → XP_047275734.1  putative speedy protein E15 isoform X1

    UniProtKB/Swiss-Prot
    A0A494C0Z2, P0DUD3, P0DUD4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    76538563..76548628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_041825.1: Suppressed sequence

    Description
    NG_041825.1: This RefSeq was removed because it is now thought that this locus is transcribed.

  2. NR_146074.1: Suppressed sequence

    Description
    NR_146074.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DUD4.1 GenPept UniProtKB/Swiss-Prot:P0DUD4

Gene LinkOut

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Molecular Biology Databases