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B230354K17Rik RIKEN cDNA B230354K17 gene [ Mus musculus (house mouse) ]

Gene ID: 105246278, updated on 5-Jan-2022

Summary

Official Symbol
B230354K17Rikprovided by MGI
Official Full Name
RIKEN cDNA B230354K17 geneprovided by MGI
Primary source
MGI:MGI:2443272
See related
Ensembl:ENSMUSG00000097119
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in central nervous system; dorsal root ganglion; and submandibular gland primordium. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 2.8), CNS E14 (RPKM 2.5) and 27 other tissues See more
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Genomic context

See B230354K17Rik in Genome Data Viewer
Location:
17; 17 B3
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (45744757..45753470)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (45433831..45442544)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35204 Neighboring gene cell division cycle 5-like (S. pombe) Neighboring gene spermatogenesis associated, serine-rich 1 Neighboring gene ribosomal protein L21 pseudogene Neighboring gene alanyl-tRNA synthetase 2, mitochondrial

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130960.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC163677, AK045689, AK083460, AK162357
    Related
    ENSMUST00000181149.2
  2. NR_130961.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in an internal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC163677, AK045689, AK083460

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    45744757..45753470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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