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Gm42107 predicted gene, 42107 [ Mus musculus (house mouse) ]

Gene ID: 105246910, updated on 8-Feb-2024

Summary

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Official Symbol
Gm42107provided by MGI
Official Full Name
predicted gene, 42107provided by MGI
Primary source
MGI:MGI:5624992
See related
AllianceGenome:MGI:5624992
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in testis adult (RPKM 4.8), CNS E14 (RPKM 1.1) and 20 other tissues See more
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Genomic context

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Location:
5 E1; 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (88711299..88713417, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (88563440..88565558, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin joining chain Neighboring gene STARR-positive B cell enhancer ABC_E6343 Neighboring gene STARR-seq mESC enhancer starr_13570 Neighboring gene STARR-positive B cell enhancer ABC_E2748 Neighboring gene UTP3 small subunit processome component Neighboring gene RUN and FYVE domain containing 3 Neighboring gene STARR-seq mESC enhancer starr_13573 Neighboring gene STARR-seq mESC enhancer starr_13574 Neighboring gene STARR-seq mESC enhancer starr_13575 Neighboring gene STARR-seq mESC enhancer starr_13576 Neighboring gene STARR-seq mESC enhancer starr_13577 Neighboring gene G-rich RNA sequence binding factor 1 Neighboring gene MOB kinase activator 1B Neighboring gene predicted gene 15682

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168902.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC121541

  2. NR_168903.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC121541

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    88711299..88713417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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