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PKD1P6-NPIPP1 PKD1P6-NPIPP1 readthrough [ Homo sapiens (human) ]

Gene ID: 105369154, updated on 11-Jun-2021

Summary

Gene symbol
PKD1P6-NPIPP1
Gene description
PKD1P6-NPIPP1 readthrough
See related
Ensembl:ENSG00000270580
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally-occurring readthrough transcription between two unprocessed pseudogenes, PKD1P6 (polycystic kidney disease 1 (autosomal dominant) pseudogene 6) and NPIPP1 (nuclear pore complex interacting protein pseudogene 1). The individual pseudogene loci are not curated as transcribed regions. Readthrough transcripts likely do not encode functional proteins. [provided by RefSeq, Jan 2016]
Expression
Ubiquitous expression in skin (RPKM 36.1), ovary (RPKM 33.7) and 25 other tissues See more
Orthologs
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Genomic context

See PKD1P6-NPIPP1 in Genome Data Viewer
Location:
16p13.11
Exon count:
18
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (15104723..15131601, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (15198580..15225458, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene pyridoxal dependent decarboxylase domain containing 1 Neighboring gene N-terminal asparagine amidase Neighboring gene RRN3 homolog, RNA polymerase I transcription factor Neighboring gene Sharpr-MPRA regulatory region 13846 Neighboring gene uncharacterized LOC100505915 Neighboring gene nuclear pore complex interacting protein pseudogene 1 Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 6 Neighboring gene microRNA 6511b-2 Neighboring gene microRNA 3180-4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Other Names

  • polycystin-1-like

Clone Names

  • FLJ00285, FLJ00286, FLJ13314, FLJ56864, FLJ56874

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_123721.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. It is likely transcribed from the ALT_REF_LOCI_1 haplotype and not the primary reference haplotype.
    Source sequence(s)
    AA308851, AK131084, DA094542, DA095374, HY148638
  2. NR_123722.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) is shorter at the 5' and 3' ends and uses an alternate internal splice site, relative to variant 1.
    Source sequence(s)
    AK302708
    Related
    ENST00000605794.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    15104723..15131601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187607.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    525549..565370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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