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LOC105369993 uncharacterized LOC105369993 [ Homo sapiens (human) ]

Gene ID: 105369993, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105369993
Gene description
uncharacterized LOC105369993
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.0) See more
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Genomic context

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Location:
12q24.21
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (114011065..114031052)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (113986929..114007901)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 19 Neighboring gene uncharacterized LOC124903025 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:114300792-114301991 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:114348209-114348709 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:114369155-114369838 Neighboring gene VISTA enhancer hs1673 Neighboring gene tRNA-Glu (anticodon CTC) 16-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7076 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:114402552-114403480 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:114403481-114404408 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_24787 Neighboring gene CRE2 enhancer downstream of TBX5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:114501919-114502507 Neighboring gene uncharacterized LOC105369994 Neighboring gene uncharacterized LOC105369995 Neighboring gene HAUS augmin like complex subunit 8 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    114011065..114031052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_945351.2 RNA Sequence

  2. XR_945352.2 RNA Sequence

  3. XR_945353.2 RNA Sequence

  4. XR_945355.2 RNA Sequence

  5. XR_945356.2 RNA Sequence

  6. XR_945354.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    113986929..114007901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083477.1 RNA Sequence

  2. XR_007083478.1 RNA Sequence

  3. XR_007083480.1 RNA Sequence

  4. XR_007083481.1 RNA Sequence

  5. XR_007083482.1 RNA Sequence

  6. XR_007083479.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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