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NUBPL-DT NUBPL divergent transcript [ Homo sapiens (human) ]

Gene ID: 105370437, updated on 10-Oct-2023

Summary

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Official Symbol
NUBPL-DTprovided by HGNC
Official Full Name
NUBPL divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55483
See related
AllianceGenome:HGNC:55483
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See NUBPL-DT in Genome Data Viewer
Location:
14q12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (31553499..31561331, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (25750731..25758563, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370438 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:31961704-31962903 Neighboring gene ribosomal protein L9 pseudogene 4 Neighboring gene G protein-coupled receptor 33 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8236 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:32030779-32031334 Neighboring gene NUBP iron-sulfur cluster assembly factor, mitochondrial Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:32090343-32090842 Neighboring gene MPRA-validated peak2131 silencer Neighboring gene RNA, U6 small nuclear 602, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr14:32152531-32152718 Neighboring gene RNA, U6 small nuclear 455, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • CTD-2213F21.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    31553499..31561331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_943720.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    25750731..25758563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084585.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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