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LOC105370457 uncharacterized LOC105370457 [ Homo sapiens (human) ]

Gene ID: 105370457, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105370457
Gene description
uncharacterized LOC105370457
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
14q21.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (38878730..38919201)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (33067414..33107869)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (39347934..39388405)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene general transcription factor IIH subunit 3 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr14:39098611-39099121 Neighboring gene keratin 8 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 639 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:39277742-39278941 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:39307339-39307875 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:39401304-39402503 Neighboring gene uncharacterized LOC102723516 Neighboring gene RIPPLY3 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:39486106-39486616 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:39486617-39487127 Neighboring gene Sharpr-MPRA regulatory region 2779 Neighboring gene SEC23 homolog A, COPII coat complex component Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5684 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5685 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5686 Neighboring gene SEC23A antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135256.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA905730

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    38878730..38919201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    33067414..33107869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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