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LINC02320 long intergenic non-protein coding RNA 2320 [ Homo sapiens (human) ]

Gene ID: 105370676, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02320provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2320provided by HGNC
Primary source
HGNC:HGNC:53239
See related
AllianceGenome:HGNC:53239
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
14q32.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (101628349..101731306, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (95863799..95967045, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370675 Neighboring gene iodothyronine deiodinase 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:102086475-102087282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:102088484-102089040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:102089041-102089597 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:102089661-102090174 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:102090175-102090686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:102132807-102133306 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:102155672-102155835 Neighboring gene ribosomal protein L26 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6093 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6094 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6095 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:102174026-102174796 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:102184781-102184986 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:102188573-102189513 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:102197209-102198408 Neighboring gene long intergenic non-protein coding RNA 239 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6096 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6097 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6098 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6099 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6100 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6101 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6102 Neighboring gene uncharacterized LOC107984658 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6103 Neighboring gene protein phosphatase 2 regulatory subunit B'gamma Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9045 Neighboring gene uncharacterized LOC124903388 Neighboring gene RNA, U6 small nuclear 790, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184269.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL049836, AL355032

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    101628349..101731306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    95863799..95967045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases