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LOC105371525 uncharacterized LOC105371525 [ Homo sapiens (human) ]

Gene ID: 105371525, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105371525
Gene description
uncharacterized LOC105371525
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
17p13.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (8670582..8721456)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (8576689..8627514)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene myosin heavy chain 10 Neighboring gene ribosomal protein S26 pseudogene 53 Neighboring gene peptidylprolyl isomerase A pseudogene 52 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11699 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:8532416-8533194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:8533195-8533972 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:8533973-8534750 Neighboring gene Sharpr-MPRA regulatory region 9864 Neighboring gene VISTA enhancer hs2548 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:8599868-8600378 Neighboring gene Sharpr-MPRA regulatory region 493 Neighboring gene uncharacterized LOC105371526 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8642150-8642650 Neighboring gene uncharacterized LOC105371529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11700 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11701 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8186 Neighboring gene coiled-coil domain containing 42 Neighboring gene speedy/RINGO cell cycle regulator family member E4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    8670582..8721456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001752781.1 RNA Sequence

  2. XR_934213.3 RNA Sequence

  3. XR_001752783.2 RNA Sequence

  4. XR_001752784.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    8576689..8627514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087871.1 RNA Sequence

  2. XR_007087873.1 RNA Sequence

  3. XR_007087872.1 RNA Sequence

  4. XR_007087874.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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