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LINC01680 long intergenic non-protein coding RNA 1680 [ Homo sapiens (human) ]

Gene ID: 105371660, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01680provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1680provided by HGNC
Primary source
HGNC:HGNC:52467
See related
Ensembl:ENSG00000233882 AllianceGenome:HGNC:52467
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01680 in Genome Data Viewer
Location:
1q31.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (191221159..191228498, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (190567555..190574902, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (191190289..191197628, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:190647894-190649093 Neighboring gene long intergenic non-protein coding RNA 1720 Neighboring gene MPRA-validated peak580 silencer Neighboring gene MPRA-validated peak582 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr1:190827140-190827685 Neighboring gene MPRA-validated peak586 silencer Neighboring gene MPRA-validated peak587 silencer Neighboring gene MPRA-validated peak588 silencer Neighboring gene MPRA-validated peak594 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2255 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2256 Neighboring gene MPRA-validated peak595 silencer Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 46 Neighboring gene MPRA-validated peak596 silencer Neighboring gene MPRA-validated peak598 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:191401715-191402216 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:191402217-191402716 Neighboring gene NANOG hESC enhancer GRCh37_chr1:191439867-191440400 Neighboring gene MPRA-validated peak599 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1650 Neighboring gene long intergenic non-protein coding RNA 2770 Neighboring gene MPRA-validated peak600 silencer Neighboring gene MPRA-validated peak601 silencer Neighboring gene uncharacterized LOC105371661

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146892.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX105282
    Related
    ENST00000434983.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    191221159..191228498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    190567555..190574902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases