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LINC02086 long intergenic non-protein coding RNA 2086 [ Homo sapiens (human) ]

Gene ID: 105371809, updated on 4-Dec-2023

Summary

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Official Symbol
LINC02086provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2086provided by HGNC
Primary source
HGNC:HGNC:52936
See related
AllianceGenome:HGNC:52936
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 2.5), appendix (RPKM 0.5) and 4 other tissues See more
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Genomic context

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Location:
17q21.32
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (48680762..48707346)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (49544362..49570947)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene HOXB cluster antisense RNA 4 Neighboring gene microRNA 196a-1 Neighboring gene long intergenic non-protein coding RNA 3057 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:46718588-46719586 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:46719587-46720583 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:46723751-46724419 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12339 Neighboring gene ribosomal protein L9 pseudogene 28 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:46790297-46790470 Neighboring gene cytochrome c oxidase subunit 6B1 pseudogene 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:46799826-46800340 Neighboring gene PRAC2 small nuclear protein Neighboring gene PRAC1 small nuclear protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC02086 promotes cell viability and inhibits cell apoptosis in breast cancer by sponging miR-6757-5p and up-regulating EPHA2.
    Title: LINC02086 promotes cell viability and inhibits cell apoptosis in breast cancer by sponging miR-6757-5p and up-regulating EPHA2.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • CTD-2377D24.6
  • CTD-2377D24.8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_189644.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091179, AC103702

  2. NR_189645.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091179, AC103702

  3. NR_189646.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091179, AC103702

  4. NR_189647.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091179, AC103702

  5. NR_189648.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091179, AC103702

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    48680762..48707346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_934818.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    49544362..49570947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087593.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases