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LOC105374312 uncharacterized LOC105374312 [ Homo sapiens (human) ]

Gene ID: 105374312, updated on 13-Mar-2024

Summary

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Gene symbol
LOC105374312
Gene description
uncharacterized LOC105374312
See related
Ensembl:ENSG00000272840
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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Location:
3q21.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (125774714..125797953)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (128507111..128530382)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (125493557..125516796)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 7 subfamily E member 53 pseudogene Neighboring gene translation initiation factor IF-2-like Neighboring gene MPRA-validated peak4810 silencer Neighboring gene olfactory receptor family 7 subfamily E member 97 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125481608-125482116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:125485452-125486096 Neighboring gene uncharacterized LOC124909424 Neighboring gene ribosomal protein S24 pseudogene 9 Neighboring gene microRNA 548i-1 Neighboring gene RPS3A pseudogene 14 Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 11 Neighboring gene long intergenic non-protein coding RNA 2614 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_153417.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BF057812, BG216262
    Related
    ENST00000610060.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    125774714..125797953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187537.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    114987..138259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    128507111..128530382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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