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YAE1-DT YAE1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105375240, updated on 10-Oct-2023

Summary

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Official Symbol
YAE1-DTprovided by HGNC
Official Full Name
YAE1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55820
See related
AllianceGenome:HGNC:55820
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
7p14.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (39551329..39566349, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (39708885..39723890, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene POU class 6 homeobox 2 Neighboring gene uncharacterized LOC105375238 Neighboring gene NANOG hESC enhancer GRCh37_chr7:39502080-39502581 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39504601-39505102 Neighboring gene uncharacterized LOC105375237 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:39547614-39548813 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25876 Neighboring gene MPRA-validated peak6497 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25877 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25878 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:39629115-39629662 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18111 Neighboring gene TMX1 pseudogene 1 Neighboring gene akirin 1 pseudogene Neighboring gene YAE1 maturation factor of ABCE1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC011290.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187579.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011290

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    39551329..39566349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    39708885..39723890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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