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LOC105375972 uncharacterized LOC105375972 [ Homo sapiens (human) ]

Gene ID: 105375972, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105375972
Gene description
uncharacterized LOC105375972
See related
Ensembl:ENSG00000230920
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
9p23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (9799392..9803791)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (9810601..9814999)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (9799392..9803791)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type D Neighboring gene ribosomal protein S26 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 1388 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:9556889-9557562 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:9577422-9577610 Neighboring gene RNA, 7SL, cytoplasmic 5, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:9914591-9915090 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:9998786-9999985 Neighboring gene NANOG hESC enhancer GRCh37_chr9:10011672-10012190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19773 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:10633883-10634384 Neighboring gene PTPRD divergent transcript Neighboring gene IMP3 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135135.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL513422, BX105718
    Related
    ENST00000449531.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    9799392..9803791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    9810601..9814999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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