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LINC02957 long intergenic non-protein coding RNA 2957 [ Homo sapiens (human) ]

Gene ID: 105376144, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02957provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2957provided by HGNC
Primary source
HGNC:HGNC:55977
See related
Ensembl:ENSG00000260454
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
9q22.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (90997038..91001901)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (103162929..103167792)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20023 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20022 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28573 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28574 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28576 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28577 Neighboring gene spleen associated tyrosine kinase Neighboring gene ReSE screen-validated silencer GRCh37_chr9:93642434-93642646 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20024 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:93683616-93683778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28578 Neighboring gene uncharacterized LOC105379829 Neighboring gene uncharacterized LOC105376143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:93738511-93739011 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:93762652-93763851 Neighboring gene NANOG hESC enhancer GRCh37_chr9:93765100-93765657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28579 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28580 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28581 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28582 Neighboring gene uncharacterized LOC100129316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:93833179-93834084 Neighboring gene long intergenic non-protein coding RNA 2937 Neighboring gene long intergenic non-protein coding RNA 484 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:93909043-93909610 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28583 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28584

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184136.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355607
    Related
    ENST00000661568.1

  2. NR_184137.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355607
    Related
    ENST00000655562.1

  3. NR_184138.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355607
    Related
    ENST00000662091.1

  4. NR_184139.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355607
    Related
    ENST00000655868.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    90997038..91001901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    103162929..103167792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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