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LOC105376306 uncharacterized LOC105376306 [ Homo sapiens (human) ]

Gene ID: 105376306, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105376306
Gene description
uncharacterized LOC105376306
See related
Ensembl:ENSG00000288989
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.1), spleen (RPKM 0.6) and 22 other tissues See more
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Genomic context

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Location:
9q34.13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (133028152..133030422, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (145242308..145244578, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (135903539..135905809, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene growth factor independent 1B transcriptional repressor Neighboring gene RNA, U7 small nuclear 21 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:135869188-135869748 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:135869749-135870309 Neighboring gene CRISPRi-validated cis-regulatory element chr9.3630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:135876277-135876777 Neighboring gene GATA motif-containing MPRA enhancer 41 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:135880361-135881232 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:135894502-135895194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:135895195-135895887 Neighboring gene small nucleolar RNA, C/D box 141A Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29226 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:135906049-135906700 Neighboring gene general transcription factor IIIC subunit 5 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20441 Neighboring gene uncharacterized LOC124902325 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:135935579-135936330 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:135936331-135937083 Neighboring gene microRNA 6877

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. Wistow G, et al. Mol Vis, 2002 Jun 15. PMID 12107413

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135119.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL162417, CD674435
    Related
    ENST00000685810.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    133028152..133030422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    145242308..145244578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases