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LINC02741 long intergenic non-protein coding RNA 2741 [ Homo sapiens (human) ]

Gene ID: 105376640, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02741provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2741provided by HGNC
Primary source
HGNC:HGNC:54258
See related
Ensembl:ENSG00000255388 AllianceGenome:HGNC:54258
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
11p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (41589346..41714536, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (41736045..41861226, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 4C Neighboring gene ReSE screen-validated silencer GRCh37_chr11:41216161-41216333 Neighboring gene RNA, U6 small nuclear 365, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:41266457-41267413 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:41324368-41325026 Neighboring gene NANOG hESC enhancer GRCh37_chr11:41414109-41414610 Neighboring gene NANOG hESC enhancer GRCh37_chr11:41448963-41449564 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:41519459-41520022 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:41623188-41623333 Neighboring gene ribosomal protein L9 pseudogene 23 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:41735352-41736094 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:41775422-41776621 Neighboring gene long intergenic non-protein coding RNA 1499 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:41809334-41810021 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:41810022-41810708 Neighboring gene uncharacterized LOC105376639 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:41890849-41891036

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    41589346..41714536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001748196.2 RNA Sequence

  2. XR_931218.3 RNA Sequence

    Related
    ENST00000657598.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    41736045..41861226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082403.1 RNA Sequence

  2. XR_007082402.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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