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LINC02782 long intergenic non-protein coding RNA 2782 [ Homo sapiens (human) ]

Gene ID: 105376681, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02782provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2782provided by HGNC
Primary source
HGNC:HGNC:54302
See related
AllianceGenome:HGNC:54302
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p36.32
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (5086459..5098548, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (4602317..4614412, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:5045612-5046811 Neighboring gene uncharacterized LOC124904589 Neighboring gene long intergenic non-protein coding RNA 2781 Neighboring gene uncharacterized LOC102724429 Neighboring gene MPRA-validated peak22 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:5112177-5112908 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:5143570-5144769 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:5178470-5179138 Neighboring gene uncharacterized LOC105376682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5203113-5203613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5217254-5217754 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5285469-5286066 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:5286067-5286664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5371655-5372156 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:5408560-5409759 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:5448514-5449713 Neighboring gene Sharpr-MPRA regulatory region 1516 Neighboring gene uncharacterized LOC124904590 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:5487427-5487926

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183671.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL691497

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    5086459..5098548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    4602317..4614412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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