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LINC02462 long intergenic non-protein coding RNA 2462 [ Homo sapiens (human) ]

Gene ID: 105377434, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02462provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2462provided by HGNC
Primary source
HGNC:HGNC:53399
See related
AllianceGenome:HGNC:53399
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02462 in Genome Data Viewer
Location:
4q28.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (134423868..134545504)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (137746346..137867993)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (135345023..135466659)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:134882009-134882508 Neighboring gene Sharpr-MPRA regulatory region 7344 Neighboring gene NANOG hESC enhancer GRCh37_chr4:134933235-134933765 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:134935198-134935698 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:134935699-134936199 Neighboring gene poly(A) binding protein cytoplasmic 4 like Neighboring gene ReSE screen-validated silencer GRCh37_chr4:134981541-134981750 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:134991841-134992529 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:135129339-135129839 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:135286515-135287714 Neighboring gene pescadillo ribosomal biogenesis factor 1 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 8780 Neighboring gene uncharacterized LOC105377436 Neighboring gene Sharpr-MPRA regulatory region 6313 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:135545237-135545975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:135547840-135548340 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:135548341-135548841 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:135604303-135604886 Neighboring gene NANOG hESC enhancer GRCh37_chr4:135615182-135615683 Neighboring gene NANOG hESC enhancer GRCh37_chr4:135835285-135835838 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:135837792-135838991 Neighboring gene uncharacterized LOC105377438 Neighboring gene uncharacterized LOC105377437 Neighboring gene cytochrome b-c1 complex subunit 8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147155.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096748, AC107221

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    134423868..134545504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    137746346..137867993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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