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LINC01753 long intergenic non-protein coding RNA 1753 [ Homo sapiens (human) ]

Gene ID: 105378739, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01753provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1753provided by HGNC
Primary source
HGNC:HGNC:52541
See related
Ensembl:ENSG00000230250 AllianceGenome:HGNC:52541
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.0) See more
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Genomic context

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See LINC01753 in Genome Data Viewer
Location:
1p32.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (55915609..55944963, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (55798908..55827947, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (56381282..56410636, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:55894365-55895564 Neighboring gene RNA, U6 small nuclear 830, pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8495 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:55991682-55991848 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1074 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:56185632-56186132 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:56186133-56186633 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:56225851-56226376 Neighboring gene VISTA enhancer hs1622 Neighboring gene uncharacterized LOC105378740 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8540 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8557 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8565 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8598 Neighboring gene uncharacterized LOC105378737 Neighboring gene long intergenic non-protein coding RNA 1755 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Q pseudogene 1 Neighboring gene uncharacterized LOC105378741

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147162.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL606827, BX111514
    Related
    ENST00000458145.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    55915609..55944963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    55798908..55827947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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