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Mal2 mal, T cell differentiation protein 2 [ Mus musculus (house mouse) ]

Gene ID: 105853, updated on 23-Jun-2021

Summary

Official Symbol
Mal2provided by MGI
Official Full Name
mal, T cell differentiation protein 2provided by MGI
Primary source
MGI:MGI:2146021
See related
Ensembl:ENSMUSG00000024479
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI461653
Expression
Biased expression in lung adult (RPKM 40.9), cortex adult (RPKM 32.2) and 13 other tissues See more
Orthologs
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Genomic context

See Mal2 in Genome Data Viewer
Location:
15; 15 D1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (54434762..54466242)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (54571366..54602846)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (54402921..54434401)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene collectin sub-family member 10 Neighboring gene ribosomal protein L19 pseudogene Neighboring gene ubiquitin-conjugating enzyme E2 C-like Neighboring gene cellular communication network factor 3 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Clone Names

  • MGC130604

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of myelin sheath IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in myelination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in transcytosis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
 
located_in hippocampal mossy fiber to CA3 synapse ISO
Inferred from Sequence Orthology
more info
 
is_active_in integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of synaptic vesicle membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane raft ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178920.4NP_849251.1  protein MAL2

    See identical proteins and their annotated locations for NP_849251.1

    Status: VALIDATED

    Source sequence(s)
    AC115924
    Consensus CDS
    CCDS27470.1
    UniProtKB/Swiss-Prot
    Q8BI08
    UniProtKB/TrEMBL
    Q2KHK7
    Related
    ENSMUSP00000025356.3, ENSMUST00000025356.4
    Conserved Domains (1) summary
    pfam01284
    Location:31168
    MARVEL; Membrane-associating domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    54434762..54466242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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