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LINC00449 long intergenic non-protein coding RNA 449 [ Homo sapiens (human) ]

Gene ID: 106478991, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00449provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 449provided by HGNC
Primary source
HGNC:HGNC:42786
See related
Ensembl:ENSG00000203441 AllianceGenome:HGNC:42786
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC00449 in Genome Data Viewer
Location:
13q32.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (99499723..99501063, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (98710615..98711956, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (100151977..100153317, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:100069445-100070364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7939 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7940 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7941 Neighboring gene C-C motif chemokine receptor 12, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7942 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7943 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7944 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7945 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:100084644-100085843 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7947 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:100105623-100106122 Neighboring gene Sharpr-MPRA regulatory region 5830 Neighboring gene MPRA-validated peak2103 silencer Neighboring gene long intergenic non-protein coding RNA 1232 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:100147579-100148093 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7948 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7949 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7950 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:100153518-100154106 Neighboring gene transmembrane 9 superfamily member 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5471 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5472 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7952 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7953 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7954 Neighboring gene RNY3 pseudogene 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:100219097-100219596 Neighboring gene long intergenic non-protein coding RNA 1039 Neighboring gene cofilin 1 pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_133664.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139035
    Related
    ENST00000366259.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    99499723..99501063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    98710615..98711956 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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