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ATP6V1B2 ATPase H+ transporting V1 subunit B2 [ Sus scrofa (pig) ]

Gene ID: 106504095, updated on 13-Mar-2024

Summary

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Official Symbol
ATP6V1B2provided by VGNC
Official Full Name
ATPase H+ transporting V1 subunit B2provided by VGNC
Primary source
VGNC:VGNC:85671
See related
Ensembl:ENSSSCG00000028694
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 42.0), ovary (RPKM 34.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (4289257..4318587)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (4718964..4748253, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene ferritin light chain pseudogene Neighboring gene solute carrier family 18 member A1 Neighboring gene leucine zipper tumor suppressor 1 Neighboring gene uncharacterized LOC110256784

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ATP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit B, brain isoform
Names
ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    4289257..4318587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003483379.4 → XP_003483427.1  V-type proton ATPase subunit B, brain isoform

    See identical proteins and their annotated locations for XP_003483427.1

    UniProtKB/TrEMBL
    A0A480UKG6, A0A4X1VDG8, A0A8D1T4P6, A0A8D1ZCZ1
    Related
    ENSSSCP00000075505.1, ENSSSCT00000093105.1
    Conserved Domains (4) summary
    cd01135
    Location:118 → 401
    V_A-ATPase_B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi ...
    TIGR01040
    Location:46 → 509
    V-ATPase_V1_B; V-type (H+)-ATPase V1, B subunit
    pfam00306
    Location:417 → 510
    ATP-synt_ab_C; ATP synthase alpha/beta chain, C terminal domain
    pfam02874
    Location:50 → 116
    ATP-synt_ab_N; ATP synthase alpha/beta family, beta-barrel domain
Nucleotide Protein
Heading Accession and Version

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