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LOC106574126 profilin-2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106574126, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106574126
Gene description
profilin-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
pfn2; PROF2
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Genomic context

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See LOC106574126 in Genome Data Viewer
Location:
chromosome: ssa16
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa16 NC_059457.1 (51405877..51412411, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa16 NC_027315.1 (53236511..53244186, complement)

Chromosome ssa16 - NC_059457.1Genomic Context describing neighboring genes Neighboring gene protein ANKUB1 Neighboring gene ring finger protein 13 Neighboring gene uncharacterized LOC123727852 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene TSC22 domain family protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
profilin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059457.1 Reference Ssal_v3.1

    Range
    51405877..51412411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014149743.2 → XP_014005218.1  profilin-2

    UniProtKB/TrEMBL
    C0H9Y5
    Conserved Domains (1) summary
    smart00392
    Location:1 → 139
    PROF; Profilin
Nucleotide Protein
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