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LOC106584797 acyl-CoA Delta-6 desaturase [ Salmo salar (Atlantic salmon) ]

Gene ID: 106584797, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106584797
Gene description
acyl-CoA Delta-6 desaturase
See related
Ensembl:ENSSSAG00000083013
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
D6fad_b
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Genomic context

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Location:
chromosome: ssa23
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa23 NC_059464.1 (47093725..47111298)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa23 NC_027322.1 (46453409..46471243, complement)

Chromosome ssa23 - NC_059464.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin-7 Neighboring gene leucine-rich repeat-containing protein 10B-like Neighboring gene delta-5 fatty acyl desaturase Neighboring gene delta-6 fatty acyl desaturase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-CoA Delta-6 desaturase
Names
delta-6 fatty acyl desaturase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059464.1 Reference Ssal_v3.1

    Range
    47093725..47111298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045705979.1 → XP_045561935.1  acyl-CoA Delta-6 desaturase isoform X1

    Related
    ENSSSAP00000169652.1, ENSSSAT00000174332.1

  2. XM_045705980.1 → XP_045561936.1  acyl-CoA Delta-6 desaturase isoform X1

  3. XM_045705978.1 → XP_045561934.1  acyl-CoA Delta-6 desaturase isoform X1

    Related
    ENSSSAP00000169567.1, ENSSSAT00000242729.1

  4. XM_045705981.1 → XP_045561937.1  acyl-CoA Delta-6 desaturase isoform X1

  5. XM_045705982.1 → XP_045561938.1  acyl-CoA Delta-6 desaturase isoform X2

  6. XM_045705983.1 → XP_045561939.1  acyl-CoA Delta-6 desaturase isoform X3

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases