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LOC106611048 intraflagellar transport protein 43 homolog A-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106611048, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106611048
Gene description
intraflagellar transport protein 43 homolog A-like
See related
Ensembl:ENSSSAG00000055332
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
CN179; ift43; ift43a
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Genomic context

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Location:
chromosome: ssa09
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa09 NC_059450.1 (21328488..21371325, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa09 NC_027308.1 (22390984..22433652, complement)

Chromosome ssa09 - NC_059450.1Genomic Context describing neighboring genes Neighboring gene estrogen-related receptor beta Neighboring gene G patch domain-containing protein 2-like Neighboring gene transforming growth factor beta-3 proprotein Neighboring gene ergosterol biosynthetic protein 28 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intraciliary retrograde transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle A IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 43 homolog A
Names
Intraflagellar transport protein 43 homolog A
intraflagellar transport 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059450.1 Reference Ssal_v3.1

    Range
    21328488..21371325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014210879.2 → XP_014066354.1  intraflagellar transport protein 43 homolog A isoform X2

    UniProtKB/Swiss-Prot
    B5X7E4, B5XBI1
    UniProtKB/TrEMBL
    A0A1S3SPS5
    Related
    ENSSSAP00000059182.1, ENSSSAT00000088936.2
    Conserved Domains (1) summary
    pfam15305
    Location:64 → 195
    IFT43; Intraflagellar transport protein 43

  2. XM_014210878.2 → XP_014066353.1  intraflagellar transport protein 43 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A1S3SPU1
    Related
    ENSSSAP00000059172.1, ENSSSAT00000088926.2
    Conserved Domains (1) summary
    pfam15305
    Location:68 → 199
    IFT43; Intraflagellar transport protein 43
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B5XBI1.1 GenPept UniProtKB/Swiss-Prot:B5XBI1

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