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tsc22d3 TSC22 domain family, member 3 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106612265, updated on 30-Nov-2023

Summary

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Gene symbol
tsc22d3
Gene description
TSC22 domain family, member 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
T22D3
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Genomic context

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Location:
chromosome: ssa09
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa09 NC_059450.1 (94744697..94793322)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa09 NC_027308.1 (85873453..85920619)

Chromosome ssa09 - NC_059450.1Genomic Context describing neighboring genes Neighboring gene proline-rich extensin-like protein EPR1 Neighboring gene cell surface glycoprotein 1-like Neighboring gene protocadherin-11 X-linked Neighboring gene kelch-like protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TSC22 domain family protein 3; uncharacterized protein tsc22d3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059450.1 Reference Ssal_v3.1

    Range
    94744697..94793322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014213268.2 → XP_014068743.1  uncharacterized protein tsc22d3 isoform X1

    UniProtKB/TrEMBL
    A0A1S3SWM2
    Conserved Domains (1) summary
    pfam01166
    Location:130 → 185
    TSC22; TSC-22/dip/bun family

  2. XM_014213269.2 → XP_014068744.1  TSC22 domain family protein 3 isoform X2

    UniProtKB/TrEMBL
    B5X433
    Conserved Domains (1) summary
    pfam01166
    Location:58 → 113
    TSC22; TSC-22/dip/bun family
Nucleotide Protein
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