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LOC107278038 transcription factor ILI1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107278038, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107278038
Gene description
transcription factor ILI1
Locus tag
OSNPB_040641700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ILI1; OsILI1; BHLH154; OsJ_16370; OsbHLH154
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32657163..32658529, complement)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938787 Neighboring gene uncharacterized LOC107277336 Neighboring gene ABC transporter B family member 19 Neighboring gene microtubule-associated protein RP/EB family member 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of growth IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ILI1
Names
Basic helix-loop-helix protein 154
LOC_Os04g54900
OSJNBa0063C18.7
OSJNBb0079B02.12
Protein INCREASED LEAF INCLINATION 1
bHLH transcription factor bHLH154

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    32657163..32658529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015779692.2 → XP_015635178.1  transcription factor ILI1

    UniProtKB/Swiss-Prot
    A0A0P0WFD4, A2XY47, Q7X742, Q9FSQ9
    Conserved Domains (1) summary
    PLN03217
    Location:29 → 103
    PLN03217; transcription factor ATBS1; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7X742.2 GenPept UniProtKB/Swiss-Prot:Q7X742

Gene LinkOut

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Molecular Biology Databases