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Exoc6 exocyst complex component 6 [ Mus musculus (house mouse) ]

Gene ID: 107371, updated on 16-Oct-2021

Summary

Official Symbol
Exoc6provided by MGI
Official Full Name
exocyst complex component 6provided by MGI
Primary source
MGI:MGI:1351611
See related
Ensembl:ENSMUSG00000053799
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
hbd; Sec15; msec15; Sec15l1; AW413330; C430002C19; 4833405E05Rik
Expression
Ubiquitous expression in placenta adult (RPKM 12.6), liver E14 (RPKM 11.8) and 28 other tissues See more
Orthologs
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Genomic context

See Exoc6 in Genome Data Viewer
Location:
19 C2; 19 32.32 cM
Exon count:
23
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (37525181..37672499)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (37536763..37684052)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (37624908..37757743)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700122C19 gene Neighboring gene predicted gene, 32294 Neighboring gene predicted gene, 41842 Neighboring gene predicted gene, 32342 Neighboring gene cytochrome P450, family 26, subfamily c, polypeptide 1 Neighboring gene cytochrome P450, family 26, subfamily a, polypeptide 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
hemoglobin deficient
GeneReviews: Not available

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within erythrocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
part_of exocyst IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
exocyst complex component 6
Names
SEC15 homolog
SEC15-like 1
SEC15-like protein 1
exocyst complex component Sec15A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175353.2NP_780562.2  exocyst complex component 6

    See identical proteins and their annotated locations for NP_780562.2

    Status: VALIDATED

    Source sequence(s)
    AC110212, AK076455, AK082881, BY100185, CD806857
    Consensus CDS
    CCDS29779.1
    UniProtKB/TrEMBL
    Q3U9D6, Q8C670
    Related
    ENSMUSP00000064332.7, ENSMUST00000066439.8
    Conserved Domains (1) summary
    pfam04091
    Location:456762
    Sec15; Exocyst complex subunit Sec15-like

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    37525181..37672499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017318044.2XP_017173533.1  exocyst complex component 6 isoform X1

    Related
    ENSMUSP00000158866.2, ENSMUST00000238954.2
    Conserved Domains (1) summary
    pfam04091
    Location:463769
    Sec15; Exocyst complex subunit Sec15-like
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