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Rdh1 retinol dehydrogenase 1 (all trans) [ Mus musculus (house mouse) ]

Gene ID: 107605, updated on 23-Jun-2021

Summary

Official Symbol
Rdh1provided by MGI
Official Full Name
retinol dehydrogenase 1 (all trans)provided by MGI
Primary source
MGI:MGI:1195275
See related
Ensembl:ENSMUSG00000089789
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in liver adult (RPKM 10.7), liver E18 (RPKM 2.1) and 4 other tissues See more
Orthologs
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Genomic context

See Rdh1 in Genome Data Viewer
Location:
10 D3; 10 75.21 cM
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127595595..127604168)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127759726..127768299)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127196819..127205355)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 39 Neighboring gene G protein-coupled receptor 182 Neighboring gene retinol dehydrogenase 9 Neighboring gene retinol dehydrogenase 16

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

General protein information

Preferred Names
retinol dehydrogenase 16
Names
retinol dehydrogenase 1 (11-cis)
NP_536684.2
XP_006513093.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_080436.3NP_536684.2  retinol dehydrogenase 16 precursor

    See identical proteins and their annotated locations for NP_536684.2

    Status: VALIDATED

    Source sequence(s)
    AC129576, AK136574, AY028928
    Consensus CDS
    CCDS24250.1
    UniProtKB/TrEMBL
    Q8CGV4, Q8VIJ7
    Related
    ENSMUSP00000073322.6, ENSMUST00000073639.6
    Conserved Domains (2) summary
    cd09805
    Location:30306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    pfam00106
    Location:30211
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    127595595..127604168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513030.5XP_006513093.1  retinol dehydrogenase 16 isoform X1

    Conserved Domains (1) summary
    cl21454
    Location:30193
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
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