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Scamp1 secretory carrier membrane protein 1 [ Mus musculus (house mouse) ]

Gene ID: 107767, updated on 22-Aug-2021

Summary

Official Symbol
Scamp1provided by MGI
Official Full Name
secretory carrier membrane protein 1provided by MGI
Primary source
MGI:MGI:1349480
See related
Ensembl:ENSMUSG00000021687
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI415563; AW122395; 4930505M11Rik
Expression
Broad expression in frontal lobe adult (RPKM 34.4), CNS E18 (RPKM 30.4) and 26 other tissues See more
Orthologs
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Genomic context

See Scamp1 in Genome Data Viewer
Location:
13; 13 C3
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (94337818..94422339, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (94201310..94285831, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (94971388..95055236, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene cytochrome c, pseudogene 3 Neighboring gene lipoma HMGIC fusion partner-like 2 Neighboring gene uncharacterized LOC115488151 Neighboring gene nucleoside diphosphate kinase B-like Neighboring gene predicted gene, 38653

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in endocytosis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within exocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in clathrin-coated vesicle ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic vesicle membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in recycling endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in recycling endosome membrane ISO
Inferred from Sequence Orthology
more info
 
located_in synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in synaptic vesicle TAS
Traceable Author Statement
more info
PubMed 
located_in synaptic vesicle membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in trans-Golgi network ISO
Inferred from Sequence Orthology
more info
 
is_active_in trans-Golgi network membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in zymogen granule membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
secretory carrier-associated membrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001346609.1NP_001333538.1  secretory carrier-associated membrane protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC148334, AK135058, AK162168
    Consensus CDS
    CCDS84049.1
    UniProtKB/TrEMBL
    Q3TSA8, Q3UY11
    Related
    ENSMUSP00000123135.2, ENSMUST00000152555.8
    Conserved Domains (2) summary
    pfam04144
    Location:65240
    SCAMP; SCAMP family
    cl03075
    Location:1363
    GrpE; nucleotide exchange factor GrpE
  2. NM_029153.1NP_083429.1  secretory carrier-associated membrane protein 1 isoform 1

    See identical proteins and their annotated locations for NP_083429.1

    Status: VALIDATED

    Source sequence(s)
    BC034283
    Consensus CDS
    CCDS36750.1
    UniProtKB/Swiss-Prot
    Q8K021
    UniProtKB/TrEMBL
    Q3TD71
    Related
    ENSMUSP00000022197.9, ENSMUST00000022197.15
    Conserved Domains (1) summary
    pfam04144
    Location:117292
    SCAMP; SCAMP family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    94337818..94422339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247117.1XP_030102977.1  secretory carrier-associated membrane protein 1 isoform X1

    Conserved Domains (2) summary
    pfam04144
    Location:65240
    SCAMP; SCAMP family
    cl03075
    Location:1363
    GrpE; nucleotide exchange factor GrpE
  2. XM_030247116.1XP_030102976.1  secretory carrier-associated membrane protein 1 isoform X1

    Conserved Domains (2) summary
    pfam04144
    Location:65240
    SCAMP; SCAMP family
    cl03075
    Location:1363
    GrpE; nucleotide exchange factor GrpE
  3. XM_006517515.3XP_006517578.1  secretory carrier-associated membrane protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006517578.1

    UniProtKB/TrEMBL
    Q3TSA8
    Related
    ENSMUSP00000120053.2, ENSMUST00000153558.8
    Conserved Domains (2) summary
    pfam04144
    Location:65240
    SCAMP; SCAMP family
    cl03075
    Location:1363
    GrpE; nucleotide exchange factor GrpE
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