U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107868281 bifunctional 15-cis-phytoene synthase, chromoplastic [ Capsicum annuum ]

Gene ID: 107868281, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107868281
Gene description
bifunctional 15-cis-phytoene synthase, chromoplastic
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Also known as
Psy; psy1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 4 NC_061114.1 (11176021..11182306)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 4 NC_029980.1 (205328571..205334820, complement)

Chromosome 4 - NC_061114.1Genomic Context describing neighboring genes Neighboring gene expansin-A13 Neighboring gene protein ALTERED XYLOGLUCAN 9 Neighboring gene trans-cinnamate:CoA ligase, peroxisomal Neighboring gene uncharacterized LOC107868280

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Expression of the genes encoding the early carotenoid biosynthetic enzymes in Capsicum annuum. Römer S, et al. Biochem Biophys Res Commun, 1993 Nov 15. PMID 8250898

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables farnesyltranstransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables geranylgeranyl-diphosphate geranylgeranyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
bifunctional 15-cis-phytoene synthase, chromoplastic
Names
15-cis-phytoene synthase, chromoplastic
Geranylgeranyl pyrophosphate geranylgeranyltransferase
chromoplast bifunctional 15-cis-phytoene synthase
chromoplastic bifunctional 15-cis-phytoene synthase
phytoene synthase 1
NP_001311896.1
XP_016570422.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324967.1 → NP_001311896.1  bifunctional 15-cis-phytoene synthase, chromoplastic

    Status: PROVISIONAL

    Source sequence(s)
    EU753855
    UniProtKB/Swiss-Prot
    B3VKF0, P37272
    UniProtKB/TrEMBL
    A0A1U8GGI5, A0A7T8XNT2, A0A7T8XNU6, A0A7T8XNV3, A0A899J1S9
    Conserved Domains (1) summary
    PLN02632
    Location:81 → 418
    PLN02632; phytoene synthase

RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061114.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    11176021..11182306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016714936.2 → XP_016570422.2  bifunctional 15-cis-phytoene synthase, chromoplastic isoform X1

    UniProtKB/Swiss-Prot
    B3VKF0, P37272
    UniProtKB/TrEMBL
    A0A7T8XNT2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P37272.1 GenPept UniProtKB/Swiss-Prot:P37272

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases