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LOC107985206 uncharacterized LOC107985206 [ Homo sapiens (human) ]

Gene ID: 107985206, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107985206
Gene description
uncharacterized LOC107985206
See related
Ensembl:ENSG00000286391
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985206 in Genome Data Viewer
Location:
1q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (154564788..154567717, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (153701908..153704862, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Src homology 2 domain containing E Neighboring gene tudor domain containing 10 Neighboring gene Sharpr-MPRA regulatory region 5559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1779 Neighboring gene UBE2Q1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1359 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:154530992-154531573 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:154531574-154532154 Neighboring gene ubiquitin conjugating enzyme E2 Q1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1363 Neighboring gene Sharpr-MPRA regulatory region 5811 Neighboring gene cholinergic receptor nicotinic beta 2 subunit Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:154561176-154562375 Neighboring gene adenosine deaminase RNA specific Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1780 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:154581605-154582598 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1781 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:154599559-154600344 Neighboring gene uncharacterized LOC124904427

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    154564788..154567717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738238.3 RNA Sequence

    Related
    ENST00000664303.2

  2. XR_001738237.2 RNA Sequence

    Related
    ENST00000659429.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    153701908..153704862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070739.1 RNA Sequence

  2. XR_007070738.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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